HL_4V89_088

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V89_088 not in the Motif Atlas

Homologous match to HL_4WF9_052

Geometric discrepancy: 0.1204

The information below is about HL_4WF9_052

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

4V89|1|BA|U|2324
4V89|1|BA|G|2325
4V89|1|BA|C|2326
4V89|1|BA|A|2327
4V89|1|BA|A|2328
4V89|1|BA|U|2329
4V89|1|BA|G|2330
4V89|1|BA|G|2331

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B0

50S ribosomal protein L27

Chain BF

50S ribosomal protein L5