HL_4V89_092

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V89_092 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.1193

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V89|1|BA|A|2471
4V89|1|BA|G|2472
4V89|1|BA|U|2473
4V89|1|BA|U|2474
4V89|1|BA|C|2475
4V89|1|BA|A|2476
4V89|1|BA|U|2477
4V89|1|BA|A|2478
4V89|1|BA|U|2479

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B8

50S ribosomal protein L36

Chain BG

50S ribosomal protein L6

Chain BQ

50S ribosomal protein L16