HL_4V89_106

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CCCUUGAGG

Length

9 nucleotides

Bulged bases

4V89|1|AA|C|841, 4V89|1|AA|U|842, 4V89|1|AA|U|843, 4V89|1|AA|G|844, 4V89|1|AA|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V89_106 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3444

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4V89|1|AA|C|839
4V89|1|AA|C|840
4V89|1|AA|C|841
4V89|1|AA|U|842
4V89|1|AA|U|843
4V89|1|AA|G|844
4V89|1|AA|A|845
4V89|1|AA|G|846
4V89|1|AA|G|847

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AR

30S ribosomal protein S18