HL_4V8A_010

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAGAG

Length

5 nucleotides

Bulged bases

4V8A|1|AA|G|321, 4V8A|1|AA|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8A_010 not in the Motif Atlas

Homologous match to HL_7RQB_011

Geometric discrepancy: 0.1168

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

4V8A|1|AA|C|319
4V8A|1|AA|A|320
4V8A|1|AA|G|321
4V8A|1|AA|A|322
4V8A|1|AA|G|323

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AY

50S ribosomal protein L24