HL_4V8A_011

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

4V8A|1|AA|G|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8A_011 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.088

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

4V8A|1|AA|G|327
4V8A|1|AA|U|328
4V8A|1|AA|G|329
4V8A|1|AA|A|330
4V8A|1|AA|A|331
4V8A|1|AA|A|332
4V8A|1|AA|G|333
4V8A|1|AA|C|334
4V8A|1|AA|C|335

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AY

50S ribosomal protein L24