HL_4V8A_029

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAGACAGCAGUCGAG

Length

17 nucleotides

Bulged bases

4V8A|1|AA|A|1046, 4V8A|1|AA|C|1052, 4V8A|1|AA|A|1106

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8A|1|AA|C|1043
4V8A|1|AA|G|1044
4V8A|1|AA|A|1045
4V8A|1|AA|A|1046
4V8A|1|AA|G|1047
4V8A|1|AA|A|1048
4V8A|1|AA|C|1049
4V8A|1|AA|A|1050
4V8A|1|AA|G|1051
4V8A|1|AA|C|1052
4V8A|1|AA|A|1106
4V8A|1|AA|G|1107
4V8A|1|AA|U|1108
4V8A|1|AA|C|1109
4V8A|1|AA|G|1110
4V8A|1|AA|A|1111
4V8A|1|AA|G|1112

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AH

50S ribosomal protein L6