HL_4V8A_058

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

4V8A|1|AA|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8A_058 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.0789

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

4V8A|1|AA|C|2404
4V8A|1|AA|G|2405
4V8A|1|AA|U|2406
4V8A|1|AA|G|2407
4V8A|1|AA|U|2408
4V8A|1|AA|G|2409
4V8A|1|AA|G|2410
4V8A|1|AA|A|2411
4V8A|1|AA|A|2412
4V8A|1|AA|G|2413

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L28

Chain AP

50S ribosomal protein L15