HL_4V8A_059

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8A_059 not in the Motif Atlas

Homologous match to HL_5J7L_193

Geometric discrepancy: 0.1216

The information below is about HL_5J7L_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V8A|1|AA|C|2471
4V8A|1|AA|G|2472
4V8A|1|AA|U|2473
4V8A|1|AA|C|2474
4V8A|1|AA|C|2475
4V8A|1|AA|A|2476
4V8A|1|AA|C|2477
4V8A|1|AA|A|2478
4V8A|1|AA|G|2479

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AH

50S ribosomal protein L6

Chain AQ

50S ribosomal protein L16