HL_4V8A_067

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

4V8A|1|AA|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8A_067 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.0501

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V8A|1|AA|G|2819
4V8A|1|AA|A|2820
4V8A|1|AA|A|2821
4V8A|1|AA|G|2822
4V8A|1|AA|A|2823
4V8A|1|AA|C|2824
4V8A|1|AA|C|2825
4V8A|1|AA|A|2826
4V8A|1|AA|C|2827

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AR

50S ribosomal protein L17

Chain AT

50S ribosomal protein L19