HL_4V8A_099

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGGAUGACC

Length

9 nucleotides

Bulged bases

4V8A|1|BA|U|1175, 4V8A|1|BA|G|1176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8A_099 not in the Motif Atlas

Homologous match to HL_7A0S_030

Geometric discrepancy: 0.4832

The information below is about HL_7A0S_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8A|1|BA|G|1170
4V8A|1|BA|G|1171
4V8A|1|BA|G|1173
4V8A|1|BA|A|1174
4V8A|1|BA|U|1175
4V8A|1|BA|G|1176
4V8A|1|BA|A|1177
4V8A|1|BA|C|1178
4V8A|1|BA|C|1179

Current chains

Chain BA

23S ribosomal RNA

Nearby chains