HL_4V8A_105

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAUGGACG

Length

8 nucleotides

Bulged bases

4V8A|1|BA|U|1453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8A_105 not in the Motif Atlas

Geometric match to HL_7RQB_037

Geometric discrepancy: 0.0842

The information below is about HL_7RQB_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32426.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

4V8A|1|BA|C|1451
4V8A|1|BA|A|1452
4V8A|1|BA|U|1453
4V8A|1|BA|G|1455
4V8A|1|BA|G|1456
4V8A|1|BA|A|1457
4V8A|1|BA|C|1458
4V8A|1|BA|G|1459

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BR

50S ribosomal protein L17