HL_4V8A_116

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

4V8A|1|BA|A|1913, 4V8A|1|BA|C|1914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8A|1|BA|G|1910
4V8A|1|BA|U|1911
4V8A|1|BA|A|1912
4V8A|1|BA|A|1913
4V8A|1|BA|C|1914
4V8A|1|BA|U|1915
4V8A|1|BA|A|1916
4V8A|1|BA|U|1917
4V8A|1|BA|A|1918
4V8A|1|BA|A|1919
4V8A|1|BA|C|1920

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA