HL_4V8A_123

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8A_123 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.1372

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V8A|1|BA|G|2303
4V8A|1|BA|G|2304
4V8A|1|BA|A|2305
4V8A|1|BA|C|2306
4V8A|1|BA|G|2307
4V8A|1|BA|G|2308
4V8A|1|BA|A|2309
4V8A|1|BA|A|2310
4V8A|1|BA|A|2311
4V8A|1|BA|U|2312
4V8A|1|BA|C|2313

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BG

50S ribosomal protein L5