HL_4V8A_145

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8A_145 not in the Motif Atlas

Homologous match to HL_4LFB_007

Geometric discrepancy: 0.1009

The information below is about HL_4LFB_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V8A|1|CA|U|296
4V8A|1|CA|G|297
4V8A|1|CA|A|298
4V8A|1|CA|G|299
4V8A|1|CA|A|300
4V8A|1|CA|G|301

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CE

30S ribosomal protein S5

Chain CQ

30S ribosomal protein S17