HL_4V8A_161

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8A_161 not in the Motif Atlas

Homologous match to HL_6CZR_095

Geometric discrepancy: 0.1526

The information below is about HL_6CZR_095

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V8A|1|CA|C|1076
4V8A|1|CA|G|1077
4V8A|1|CA|U|1078
4V8A|1|CA|G|1079
4V8A|1|CA|A|1080
4V8A|1|CA|G|1081

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CE

30S ribosomal protein S5