HL_4V8A_184

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8A_184 not in the Motif Atlas

Homologous match to HL_4LFB_016

Geometric discrepancy: 0.0963

The information below is about HL_4LFB_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V8A|1|DA|C|726
4V8A|1|DA|G|727
4V8A|1|DA|A|728
4V8A|1|DA|A|729
4V8A|1|DA|G|730
4V8A|1|DA|G|731

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DO

30S ribosomal protein S15

Chain DR

30S ribosomal protein S18