HL_4V8A_201

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGUUCCCAUUCCGAACACG

Length

19 nucleotides

Bulged bases

4V8A|1|AB|U|41

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8A|1|AB|C|32
4V8A|1|AB|G|33
4V8A|1|AB|U|34
4V8A|1|AB|U|35
4V8A|1|AB|C|36
4V8A|1|AB|C|37
4V8A|1|AB|C|38
4V8A|1|AB|A|39
4V8A|1|AB|U|40
4V8A|1|AB|U|41
4V8A|1|AB|C|42
4V8A|1|AB|C|43
4V8A|1|AB|G|44
4V8A|1|AB|A|45
4V8A|1|AB|A|46
4V8A|1|AB|C|47
4V8A|1|AB|A|48
4V8A|1|AB|C|49
4V8A|1|AB|G|50

Current chains

Chain AB

5S ribosomal RNA

Nearby chains

Chain A4

50S ribosomal protein L31

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AG

50S ribosomal protein L5

Chain AS

50S ribosomal protein L18