HL_4V8A_202

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCUCCGGG

Length

8 nucleotides

Bulged bases

4V8A|1|BA|C|2145, 4V8A|1|BA|C|2146

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8A_202 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3606

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4V8A|1|BA|C|2142
4V8A|1|BA|C|2143
4V8A|1|BA|U|2144
4V8A|1|BA|C|2145
4V8A|1|BA|C|2146
4V8A|1|BA|G|2147
4V8A|1|BA|G|2148
4V8A|1|BA|G|2149

Current chains

Chain BA

23S ribosomal RNA

Nearby chains