HL_4V8A_205

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGGGGAAACUCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8A|1|DA|C|155
4V8A|1|DA|G|156
4V8A|1|DA|G|157
4V8A|1|DA|G|158
4V8A|1|DA|G|159
4V8A|1|DA|A|160
4V8A|1|DA|A|161
4V8A|1|DA|A|162
4V8A|1|DA|C|163
4V8A|1|DA|U|164
4V8A|1|DA|C|165
4V8A|1|DA|G|166

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain AT

50S ribosomal protein L19

Chain DT

30S ribosomal protein S20