HL_4V8B_026

3D structure

PDB id

4V8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

4V8B|1|AA|U|1136, 4V8B|1|AA|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8B_026 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.3726

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

4V8B|1|AA|G|1134
4V8B|1|AA|U|1135
4V8B|1|AA|U|1136
4V8B|1|AA|C|1137
4V8B|1|AA|G|1138
4V8B|1|AA|G|1139
4V8B|1|AA|C|1140

Current chains

Chain AA

16S ribosomal RNA

Nearby chains