HL_4V8B_040

3D structure

PDB id

4V8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCAGCCCGGUAGCU

Length

14 nucleotides

Bulged bases

4V8B|1|AD|C|16, 4V8B|1|AD|C|17, 4V8B|1|AD|C|18, 4V8B|1|AD|G|19, 4V8B|1|AD|G|20, 4V8B|1|AD|A|22

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8B|1|AD|G|12
4V8B|1|AD|C|13
4V8B|1|AD|A|14
4V8B|1|AD|G|15
4V8B|1|AD|C|16
4V8B|1|AD|C|17
4V8B|1|AD|C|18
4V8B|1|AD|G|19
4V8B|1|AD|G|20
4V8B|1|AD|U|21
4V8B|1|AD|A|22
4V8B|1|AD|G|23
4V8B|1|AD|C|24
4V8B|1|AD|U|25

Current chains

Chain AD

TRNA-FMET

Nearby chains

Chain AN

30S RIBOSOMAL PROTEIN S11

Chain BA

Large subunit ribosomal RNA; LSU rRNA