HL_4V8B_063

3D structure

PDB id

4V8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

4V8B|1|BA|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8B_063 not in the Motif Atlas

Homologous match to HL_7RQB_021

Geometric discrepancy: 0.2695

The information below is about HL_7RQB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4V8B|1|BA|C|641
4V8B|1|BA|G|642
4V8B|1|BA|A|643
4V8B|1|BA|A|644
4V8B|1|BA|C|645
4V8B|1|BA|A|646
4V8B|1|BA|G|647

Current chains

Chain BA

RNA (2912-MER)

Nearby chains

Chain B6

50S ribosomal protein L33

Chain B8

50S ribosomal protein L35

Chain BO

50S ribosomal protein L15