HL_4V8B_119

3D structure

PDB id

4V8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCUUGGG

Length

7 nucleotides

Bulged bases

4V8B|1|CA|U|189, 4V8B|1|CA|G|190, 4V8B|1|CA|G|191

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8B_119 not in the Motif Atlas

Homologous match to HL_4LFB_004

Geometric discrepancy: 0.2072

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

4V8B|1|CA|C|186|||F
4V8B|1|CA|C|187
4V8B|1|CA|U|188
4V8B|1|CA|U|189
4V8B|1|CA|G|190
4V8B|1|CA|G|191
4V8B|1|CA|G|191|||A

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CT

30S RIBOSOMAL PROTEIN S17

Chain CW

30S RIBOSOMAL PROTEIN S20