HL_4V8B_123

3D structure

PDB id

4V8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8B_123 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0709

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V8B|1|CA|C|320
4V8B|1|CA|A|321
4V8B|1|CA|C|322
4V8B|1|CA|U|323
4V8B|1|CA|G|324
4V8B|1|CA|A|325
4V8B|1|CA|G|326
4V8B|1|CA|A|327
4V8B|1|CA|C|328
4V8B|1|CA|A|329
4V8B|1|CA|C|330
4V8B|1|CA|G|331
4V8B|1|CA|G|332
4V8B|1|CA|G|333

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CS

30S RIBOSOMAL PROTEIN S16

Chain CW

30S RIBOSOMAL PROTEIN S20