3D structure

PDB id
4V8C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GGGAAC
Length
6 nucleotides
Bulged bases
4V8C|1|AA|G|125
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V8C_003 not in the Motif Atlas
Homologous match to HL_7RQB_003
Geometric discrepancy: 0.0828
The information below is about HL_7RQB_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_70546.1
Basepair signature
cWW-F
Number of instances in this motif group
18

Unit IDs

4V8C|1|AA|G|123
4V8C|1|AA|G|124
4V8C|1|AA|G|125
4V8C|1|AA|A|126
4V8C|1|AA|A|127
4V8C|1|AA|C|128

Current chains

Chain AA
RNA (2912-MER)

Nearby chains

Chain A7
50S ribosomal protein L34
Chain AT
50S ribosomal protein L23

Coloring options:


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