HL_4V8C_021

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

4V8C|1|AA|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8C_021 not in the Motif Atlas

Homologous match to HL_7RQB_021

Geometric discrepancy: 0.283

The information below is about HL_7RQB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4V8C|1|AA|C|641
4V8C|1|AA|G|642
4V8C|1|AA|A|643
4V8C|1|AA|A|644
4V8C|1|AA|C|645
4V8C|1|AA|A|646
4V8C|1|AA|G|647

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain A6

50S ribosomal protein L33

Chain A8

50S ribosomal protein L35

Chain AO

50S ribosomal protein L15