HL_4V8C_031

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8C_031 not in the Motif Atlas

Geometric match to HL_5J7L_151

Geometric discrepancy: 0.3907

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

4V8C|1|AA|C|1092
4V8C|1|AA|G|1093
4V8C|1|AA|U|1094
4V8C|1|AA|A|1095
4V8C|1|AA|A|1096
4V8C|1|AA|U|1097
4V8C|1|AA|A|1098
4V8C|1|AA|G|1099

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AH

50S ribosomal protein L6