HL_4V8C_082

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

4V8C|1|BA|U|270|||M

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8C_082 not in the Motif Atlas

Geometric match to HL_4KR9_003

Geometric discrepancy: 0.3224

The information below is about HL_4KR9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70782.2

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V8C|1|BA|C|270|||K
4V8C|1|BA|U|270|||L
4V8C|1|BA|U|270|||M
4V8C|1|BA|G|270|||N

Current chains

Chain BA

RNA (2912-MER)

Nearby chains

Chain BK

50S ribosomal protein L9

Chain BZ

50S ribosomal protein L28

Chain CA

Small subunit ribosomal RNA; SSU rRNA