HL_4V8C_100

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8C_100 not in the Motif Atlas

Homologous match to HL_5J7L_158

Geometric discrepancy: 0.5275

The information below is about HL_5J7L_158

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8C|1|BA|C|884
4V8C|1|BA|C|885
4V8C|1|BA|C|886
4V8C|1|BA|A|887
4V8C|1|BA|C|888
4V8C|1|BA|C|889
4V8C|1|BA|A|890
4V8C|1|BA|G|892

Current chains

Chain BA

RNA (2912-MER)

Nearby chains

Chain DP

30S RIBOSOMAL PROTEIN S13