3D structure

PDB id
4V8C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CCCACCAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V8C_100 not in the Motif Atlas
Homologous match to HL_5J7L_158
Geometric discrepancy: 0.5275
The information below is about HL_5J7L_158
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V8C|1|BA|C|884
4V8C|1|BA|C|885
4V8C|1|BA|C|886
4V8C|1|BA|A|887
4V8C|1|BA|C|888
4V8C|1|BA|C|889
4V8C|1|BA|A|890
4V8C|1|BA|G|892

Current chains

Chain BA
RNA (2912-MER)

Nearby chains

Chain DP
30S RIBOSOMAL PROTEIN S13

Coloring options:


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