HL_4V8C_177

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

4V8C|1|CA|A|1451, 4V8C|1|CA|G|1453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8C_177 not in the Motif Atlas

Homologous match to HL_6CZR_102

Geometric discrepancy: 0.5178

The information below is about HL_6CZR_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52463.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

4V8C|1|CA|C|1449
4V8C|1|CA|U|1450
4V8C|1|CA|A|1451
4V8C|1|CA|C|1452
4V8C|1|CA|G|1453
4V8C|1|CA|G|1454

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CW

30S RIBOSOMAL PROTEIN S20