HL_4V8C_199

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4V8C|1|DA|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8C_199 not in the Motif Atlas

Homologous match to HL_6CZR_082

Geometric discrepancy: 0.4537

The information below is about HL_6CZR_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.1

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

4V8C|1|DA|C|419
4V8C|1|DA|U|420
4V8C|1|DA|U|421
4V8C|1|DA|C|422
4V8C|1|DA|G|423
4V8C|1|DA|G|424

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DF

30S RIBOSOMAL PROTEIN S3

Chain DG

30S RIBOSOMAL PROTEIN S4