HL_4V8C_204

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8C_204 not in the Motif Atlas

Homologous match to HL_4LFB_016

Geometric discrepancy: 0.0911

The information below is about HL_4LFB_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V8C|1|DA|C|726
4V8C|1|DA|G|727
4V8C|1|DA|A|728
4V8C|1|DA|A|729
4V8C|1|DA|G|730
4V8C|1|DA|G|731

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DR

30S RIBOSOMAL PROTEIN S15

Chain DU

30S RIBOSOMAL PROTEIN S18