HL_4V8C_222
3D structure
- PDB id
- 4V8C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CUUGAGGUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8C_222 not in the Motif Atlas
- Geometric match to HL_4YCO_002
- Geometric discrepancy: 0.1391
- The information below is about HL_4YCO_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
4V8C|1|DB|C|32
4V8C|1|DB|U|33
4V8C|1|DB|U|34
4V8C|1|DB|G|35
4V8C|1|DB|A|36
4V8C|1|DB|G|37
4V8C|1|DB|G|38
4V8C|1|DB|U|39
4V8C|1|DB|G|40
Current chains
- Chain DB
- TRNA-LEU
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain D1
- MRNA
- Chain DA
- Small subunit ribosomal RNA; SSU rRNA
- Chain DO
- 30S RIBOSOMAL PROTEIN S12
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