HL_4V8C_245

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCUUGG

Length

6 nucleotides

Bulged bases

4V8C|1|DA|U|189, 4V8C|1|DA|G|190

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8C_245 not in the Motif Atlas

Homologous match to HL_4LFB_004

Geometric discrepancy: 0.2166

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

4V8C|1|DA|C|186|||F
4V8C|1|DA|C|187
4V8C|1|DA|U|188
4V8C|1|DA|U|189
4V8C|1|DA|G|190
4V8C|1|DA|G|191|||A

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DT

30S RIBOSOMAL PROTEIN S17

Chain DW

30S RIBOSOMAL PROTEIN S20