HL_4V8C_256

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8C_256 not in the Motif Atlas

Homologous match to HL_3TUP_003

Geometric discrepancy: 0.398

The information below is about HL_3TUP_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

96

Unit IDs

4V8C|1|CD|G|54
4V8C|1|CD|U|55
4V8C|1|CD|U|56
4V8C|1|CD|C|57
4V8C|1|CD|A|58
4V8C|1|CD|A|59
4V8C|1|CD|A|60
4V8C|1|CD|U|61
4V8C|1|CD|C|62

Current chains

Chain CD

TRNA-FMET

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA