HL_4V8D_034
3D structure
- PDB id
- 4V8D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- ACUGUA(MIA)AU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: MIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8D_034 not in the Motif Atlas
- Geometric match to HL_5IBB_210
- Geometric discrepancy: 0.1368
- The information below is about HL_5IBB_210
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
4V8D|1|AB|A|32
4V8D|1|AB|C|33
4V8D|1|AB|U|34
4V8D|1|AB|G|35
4V8D|1|AB|U|36
4V8D|1|AB|A|37
4V8D|1|AB|MIA|38
4V8D|1|AB|A|39
4V8D|1|AB|U|40
Current chains
- Chain AB
- TRNA-TYR
Nearby chains
- Chain A1
- MRNA
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AO
- 30S RIBOSOMAL PROTEIN S12
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
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