HL_4V8D_051

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8D_051 not in the Motif Atlas

Homologous match to HL_7RQB_008

Geometric discrepancy: 0.0642

The information below is about HL_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.7

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

9

Unit IDs

4V8D|1|BA|C|246
4V8D|1|BA|G|247
4V8D|1|BA|G|248
4V8D|1|BA|C|249
4V8D|1|BA|G|250
4V8D|1|BA|A|251
4V8D|1|BA|G|252

Current chains

Chain BA

RNA (2912-MER)

Nearby chains

Chain AD

Transfer RNA; tRNA

Chain B8

50S ribosomal protein L35

Chain BO

50S ribosomal protein L15

Chain BZ

50S ribosomal protein L28