HL_4V8D_059

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGGGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8D_059 not in the Motif Atlas

Homologous match to HL_7RQB_016

Geometric discrepancy: 0.0805

The information below is about HL_7RQB_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4V8D|1|BA|C|487
4V8D|1|BA|G|488
4V8D|1|BA|G|489
4V8D|1|BA|G|491
4V8D|1|BA|A|492
4V8D|1|BA|G|493

Current chains

Chain BA

RNA (2912-MER)

Nearby chains

Chain BS

50S ribosomal protein L22