HL_4V8D_107

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8D_107 not in the Motif Atlas

Homologous match to HL_4WF9_058

Geometric discrepancy: 0.1108

The information below is about HL_4WF9_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

4V8D|1|BA|C|2551
4V8D|1|BA|U|2552
4V8D|1|BA|G|2553
4V8D|1|BA|U|2554
4V8D|1|BA|U|2555
4V8D|1|BA|C|2556
4V8D|1|BA|G|2557

Current chains

Chain BA

RNA (2912-MER)

Nearby chains

Chain AB

TRNA-TYR