HL_4V8D_152

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUCGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8D_152 not in the Motif Atlas

Geometric match to HL_1J1U_003

Geometric discrepancy: 0.1327

The information below is about HL_1J1U_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

4V8D|1|CB|G|62
4V8D|1|CB|U|63
4V8D|1|CB|U|64
4V8D|1|CB|C|65
4V8D|1|CB|G|66
4V8D|1|CB|A|67
4V8D|1|CB|A|68
4V8D|1|CB|U|69
4V8D|1|CB|C|70

Current chains

Chain CB

TRNA-TYR

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DP

50S ribosomal protein L16

Chain DV

50S ribosomal protein L25