HL_4V8D_153
3D structure
- PDB id
- 4V8D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAGCCCGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 4V8D|1|CC|C|17, 4V8D|1|CC|C|18, 4V8D|1|CC|G|19, 4V8D|1|CC|G|20, 4V8D|1|CC|U|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8D_153 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.171
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
4V8D|1|CC|C|13
4V8D|1|CC|A|14
4V8D|1|CC|G|15
4V8D|1|CC|C|16
4V8D|1|CC|C|17
4V8D|1|CC|C|18
4V8D|1|CC|G|19
4V8D|1|CC|G|20
4V8D|1|CC|U|21
4V8D|1|CC|A|22
4V8D|1|CC|G|23
Current chains
- Chain CC
- TRNA-FMET
Nearby chains
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DG
- 50S ribosomal protein L5
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