HL_4V8D_221

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

4V8D|1|DA|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8D_221 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.0717

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

4V8D|1|DA|C|2404
4V8D|1|DA|G|2405
4V8D|1|DA|U|2406
4V8D|1|DA|G|2407
4V8D|1|DA|U|2408
4V8D|1|DA|G|2409
4V8D|1|DA|G|2410
4V8D|1|DA|A|2411
4V8D|1|DA|A|2412
4V8D|1|DA|G|2413

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain DO

50S ribosomal protein L15

Chain DZ

50S ribosomal protein L28