HL_4V8D_238

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCUAGGGGGCCCACCAGCCUACCAAAC

Length

27 nucleotides

Bulged bases

4V8D|1|BA|A|887, 4V8D|1|BA|C|888, 4V8D|1|BA|C|889, 4V8D|1|BA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8D|1|BA|G|875
4V8D|1|BA|C|876
4V8D|1|BA|U|877
4V8D|1|BA|A|878
4V8D|1|BA|G|879
4V8D|1|BA|G|880
4V8D|1|BA|G|881
4V8D|1|BA|G|882
4V8D|1|BA|G|883
4V8D|1|BA|C|884
4V8D|1|BA|C|885
4V8D|1|BA|C|886
4V8D|1|BA|A|887
4V8D|1|BA|C|888
4V8D|1|BA|C|889
4V8D|1|BA|A|890
4V8D|1|BA|G|892
4V8D|1|BA|C|893
4V8D|1|BA|C|894
4V8D|1|BA|U|895
4V8D|1|BA|A|896
4V8D|1|BA|C|897
4V8D|1|BA|C|898
4V8D|1|BA|A|899
4V8D|1|BA|A|900
4V8D|1|BA|A|901
4V8D|1|BA|C|902

Current chains

Chain BA

RNA (2912-MER)

Nearby chains

Chain AB

Transfer RNA; tRNA

Chain AP

30S RIBOSOMAL PROTEIN S13

Chain AV

30S RIBOSOMAL PROTEIN S19

Chain BP

50S ribosomal protein L16

Chain BV

50S ribosomal protein L25