HL_4V8F_014

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

4V8F|1|AA|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_014 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.0926

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

4V8F|1|AA|G|410
4V8F|1|AA|G|411
4V8F|1|AA|A|412
4V8F|1|AA|C|413
4V8F|1|AA|C|414
4V8F|1|AA|A|415
4V8F|1|AA|C|416
4V8F|1|AA|C|417

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AO

50S ribosomal protein L15