HL_4V8F_029

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_029 not in the Motif Atlas

Homologous match to HL_7RQB_028

Geometric discrepancy: 0.0997

The information below is about HL_7RQB_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

4V8F|1|AA|G|978
4V8F|1|AA|G|979
4V8F|1|AA|A|980
4V8F|1|AA|A|981
4V8F|1|AA|C|982
4V8F|1|AA|A|983
4V8F|1|AA|A|984
4V8F|1|AA|C|985

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain A1

50S ribosomal protein L20

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AX

50S ribosomal protein L30