HL_4V8F_029
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGAACAAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8F_029 not in the Motif Atlas
- Homologous match to HL_7RQB_028
- Geometric discrepancy: 0.0997
- The information below is about HL_7RQB_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_64430.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
4V8F|1|AA|G|978
4V8F|1|AA|G|979
4V8F|1|AA|A|980
4V8F|1|AA|A|981
4V8F|1|AA|C|982
4V8F|1|AA|A|983
4V8F|1|AA|A|984
4V8F|1|AA|C|985
Current chains
- Chain AA
- RNA (2912-MER)
Nearby chains
- Chain A1
- 50S ribosomal protein L20
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain AX
- 50S ribosomal protein L30
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