3D structure

PDB id
4V8F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GGAACAAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V8F_029 not in the Motif Atlas
Homologous match to HL_7RQB_028
Geometric discrepancy: 0.0997
The information below is about HL_7RQB_028
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_64430.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
13

Unit IDs

4V8F|1|AA|G|978
4V8F|1|AA|G|979
4V8F|1|AA|A|980
4V8F|1|AA|A|981
4V8F|1|AA|C|982
4V8F|1|AA|A|983
4V8F|1|AA|A|984
4V8F|1|AA|C|985

Current chains

Chain AA
RNA (2912-MER)

Nearby chains

Chain A1
50S ribosomal protein L20
Chain AB
5S ribosomal RNA; 5S rRNA
Chain AX
50S ribosomal protein L30

Coloring options:


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