3D structure

PDB id
4V8F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GUUAAUAUUC
Length
10 nucleotides
Bulged bases
4V8F|1|AA|U|1396, 4V8F|1|AA|U|1397
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V8F_037 not in the Motif Atlas
Homologous match to HL_7RQB_036
Geometric discrepancy: 0.0693
The information below is about HL_7RQB_036
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_69023.2
Basepair signature
cWW-tWH-F-F-F-F
Number of instances in this motif group
16

Unit IDs

4V8F|1|AA|G|1389
4V8F|1|AA|U|1390
4V8F|1|AA|U|1391
4V8F|1|AA|A|1392
4V8F|1|AA|A|1393
4V8F|1|AA|U|1394
4V8F|1|AA|A|1395
4V8F|1|AA|U|1396
4V8F|1|AA|U|1397
4V8F|1|AA|C|1398

Current chains

Chain AA
RNA (2912-MER)

Nearby chains

Chain AT
50S ribosomal protein L23

Coloring options:


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