HL_4V8F_053

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_053 not in the Motif Atlas

Homologous match to HL_3U4M_001

Geometric discrepancy: 0.445

The information below is about HL_3U4M_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V8F|1|AA|C|2143
4V8F|1|AA|U|2144
4V8F|1|AA|C|2145
4V8F|1|AA|C|2146
4V8F|1|AA|G|2147
4V8F|1|AA|G|2148

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain BN

30S RIBOSOMAL PROTEIN S11