HL_4V8F_057

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_057 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.3112

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V8F|1|AA|G|2303
4V8F|1|AA|G|2304
4V8F|1|AA|A|2305
4V8F|1|AA|C|2306
4V8F|1|AA|G|2307
4V8F|1|AA|G|2308
4V8F|1|AA|A|2309
4V8F|1|AA|A|2310
4V8F|1|AA|A|2311
4V8F|1|AA|U|2312
4V8F|1|AA|C|2313

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AG

50S ribosomal protein L5