HL_4V8F_061

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

4V8F|1|AA|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_061 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.0884

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

4V8F|1|AA|C|2404
4V8F|1|AA|G|2405
4V8F|1|AA|U|2406
4V8F|1|AA|G|2407
4V8F|1|AA|U|2408
4V8F|1|AA|G|2409
4V8F|1|AA|G|2410
4V8F|1|AA|A|2411
4V8F|1|AA|A|2412
4V8F|1|AA|G|2413

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AO

50S ribosomal protein L15

Chain AZ

50S ribosomal protein L28