HL_4V8F_070

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

4V8F|1|AA|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_070 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.0603

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V8F|1|AA|G|2819
4V8F|1|AA|A|2820
4V8F|1|AA|A|2821
4V8F|1|AA|G|2822
4V8F|1|AA|A|2823
4V8F|1|AA|C|2824
4V8F|1|AA|C|2825
4V8F|1|AA|A|2826
4V8F|1|AA|C|2827

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain A0

50S ribosomal protein L17

Chain AE

50S ribosomal protein L3